Bioconductor REPEATED MEASURES

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deseq2 rnaseq repeated measures time series design formula

updated 4.4 years ago by Michael Love 42k • written 4.4 years ago by Dorien ▴ 10

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602

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deseq2 repeated measures

updated 4.5 years ago by Michael Love 42k • written 4.5 years ago by jperin • 0

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dream variancePartition limma differential expression repeated measures

updated 4.7 years ago by Gordon Smyth 51k • written 4.7 years ago by hermidalc ▴ 20

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1.4k

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SVA deseq2 repeated measures

updated 4.7 years ago by Robert Castelo ★ 3.3k • written 4.7 years ago by sara.blocquiaux • 0

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2.1k

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limma rna-seq mixed model repeated measures

updated 5.7 years ago by Gordon Smyth 51k • written 5.7 years ago by mikhael.manurung ▴ 280

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1.6k

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edgeR rnaseq repeated measures

updated 6.2 years ago by Ryan C. Thompson ★ 7.9k • written 6.2 years ago by wjh180 • 0

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4.0k

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deseq2 repeated measures time course

updated 6.4 years ago by Michael Love 42k • written 6.4 years ago by Marion • 0

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5.1k

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LIMMA FACTORIAL REPEATED MEASURES differential gene expression

8.8 years ago • updated 8.6 years ago robert.maughan • 0

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862

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repeated measures

8.6 years ago PJ • 0

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Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0

Well, I was looking at the result table (enrich18k@result, or yy@result in your example), and it gives every pathway even the non-significa…

Comment: Trouble reading samplesheet in with diffbind to create dba by Mallory • 0

Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …

Answer: Trouble reading samplesheet in with diffbind to create dba by Anthony • 0

I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …

Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100

Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz

Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k

The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …

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A: dream vignette says limma-voom repeated measures two-group comparison needs two

Answer: Get the latest gene name from Entrez ID

Get the latest gene name from Entrez ID

Answer: biomaRt not working - lazy table error

Answer: How to do DESeq2 on Kallisto Data

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